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Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools.
 
Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools.
  
Its home page is [http://biopp.univ-montp2.fr/ http://biopp.univ-montp2.fr/]. Two discussion groups exist for [http://groups.google.com/group/biopp-help-forum users] and [http://groups.google.com/group/biopp-devel-forum developers].
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{| align="center" style="width:80%; border-spacing: 1em; font-size: 150%"
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| style="background-color: #921d00; text-align: center; padding: 1em; border-radius: 1em;" | [[installation|<span style="color: #dd8f07">Get the libraries</span>]]
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| style="background-color: #921d00; text-align: center; padding: 1em; border-radius: 1em;" | [[API_Documentation|<span style="color: #dd8f07">Browse the documentation</span>]]
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| style="background-color: #921d00; text-align: center; padding: 1em; border-radius: 1em;" | [http://groups.google.com/group/biopp-help-forum <span style="color: #dd8f07">Ask for help on the forum</span>]
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| style="background-color: #921d00; text-align: center; padding: 1em; border-radius: 1em;" | [http://home.gna.org/bppsuite <span style="color: #dd8f07">Get the Bio++ program suite</span>]
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| style="background-color: #921d00; text-align: center; padding: 1em; border-radius: 1em;" | [http://biopp.univ-montp2.fr/bug/ <span style="color: #dd8f07">Report a bug</span>]
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| style="background-color: #921d00; text-align: center; padding: 1em; border-radius: 1em;" | [http://groups.google.com/group/biopp-devel-forum <span style="color: #dd8f07">Discuss future developments</span>]
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This wiki gathers tutorial articles and examples for developers willing to use the Bio++ libraries in their programs.
 
This wiki gathers tutorial articles and examples for developers willing to use the Bio++ libraries in their programs.
* [[Installation]]
 
* [[API documentation]]
 
 
* [[List of methods]] — an extensive list of methods and tools implemented in the library, and their corresponding classes.
 
* [[List of methods]] — an extensive list of methods and tools implemented in the library, and their corresponding classes.
 
* [[:Category:Usage]] — how to use the Bio++ library in your programs.
 
* [[:Category:Usage]] — how to use the Bio++ library in your programs.

Revision as of 09:55, 31 October 2014

Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools.

Get the libraries Browse the documentation Ask for help on the forum
Get the Bio++ program suite Report a bug Discuss future developments


This wiki gathers tutorial articles and examples for developers willing to use the Bio++ libraries in their programs.


In addition to those libraries, several executable are available:

  • BppSuite (homepage) is a suite of ready-to-use programs for phylogenetic and sequence
  • Bpp Phyview ([1]) is a Qt based visual interface for of trees (needs bpp-qt).
  • TestNH ([2]) is a package dedicated to the testing of non-homogeneous process in sequence evolution.

Bio++ and BppSuite are published under the CeCILL [3] free software licence (GPL-compatible).