BppSuite

BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

Here is the forge where the programs are described.

Standalone executables
Standalone executables are available for linux32, linux64, win32, win64 and Mac.

Getting the sources
This is done with git, for example in directory $bpp_dir:

cd $bpp_dir git clone http://biopp.univ-montp2.fr/git/bppsuite

Compiling
Bio++ libraries shoud be installed beforehand, for example in $bpp_dir.

That's it ! The executables are now installed in $bpp_dir/bin. For more information on how to compile and run Bio++ dependent programs, see the Usage pages.


 * Without the option -DCMAKE_INSTALL_PREFIX=$bpp_dir, the standard /usr/local directory will be used, and the executables installed in /usr/local/bin, a location which requires superuser access rights.

Usage
Bppsuite executables should know where the dynamic libraries are. A way to check it is the command:

To configure this, set in the .bashrc the environment variable :

(and source this file or relog).

Documentation
You can also generate the pdf documentation by typing :

Examples
Many examples are available in the subdirectory of Examples.

Documentation
Documentation can be found at http://biopp.univ-montp2.fr/manual/html/bppsuite/.