List of methods

Here is a list of methods available in the Bio++ libraries, with appropriate class/function names, links and references!

File formats
Supported formats are here listed with there corresponding parser classes. It is further mentioned whether the format is implemented for reading and/or writing. The streaming option indicates that the parser also implements an iterator function, so that it is possible to loop over all sequences without storing them in memory.

Substitution models
These models can be used for pairwise distance estimation, likelihood estimation, sequence simulation, ancestral sequence reconstruction, etc.