Next: Introduction, Previous: (dir), Up: (dir) [Contents]
This is the manual of CoMap, version 1.5.2.
Copyright © 2006-2015 Julien Dutheil
| • Introduction: | Introducing the CoMap program and this manual. | |
| • Data: | How to import data into CoMap, file format, etc. | |
| • Model: | Markov model specification. | |
| • Estimation: | How to estimate parameters before an analysis. | |
| • Mapping: | Compute the substitution mapping. | |
| • Pairwise: | Performing the pairwise analysis of Dutheil et al. (2005). | |
| • Clustering: | Performing the clustering analysis of Dutheil et al. (2007). | |
| • Candidates: | Candidate groups analysis of Dutheil et al. (1010). | |
| • Pvalue: | Using the R scripts to compute p-values. | |
| • Mica: | Mutual Information Coevolution Analysis. | |
Next: Introduction, Previous: (dir), Up: (dir) [Contents]