bpp-seq
2.1.0
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Here is a list of all class members with links to the classes they belong to:
- ~ -
~AAChargeIndex() :
bpp::AAChargeIndex
~AAChenGuHuangHydrophobicityIndex() :
bpp::AAChenGuHuangHydrophobicityIndex
~AAChouFasmanAHelixIndex() :
bpp::AAChouFasmanAHelixIndex
~AAChouFasmanBSheetIndex() :
bpp::AAChouFasmanBSheetIndex
~AAChouFasmanTurnIndex() :
bpp::AAChouFasmanTurnIndex
~AAIndex1Entry() :
bpp::AAIndex1Entry
~AAIndex2Entry() :
bpp::AAIndex2Entry
~AAMassIndex() :
bpp::AAMassIndex
~AASEA1030Index() :
bpp::AASEA1030Index
~AASEAInf10Index() :
bpp::AASEAInf10Index
~AASEASup30Index() :
bpp::AASEASup30Index
~AASurfaceIndex() :
bpp::AASurfaceIndex
~AAVolumeIndex() :
bpp::AAVolumeIndex
~AbstractAlphabet() :
bpp::AbstractAlphabet
~AbstractIAlignment() :
bpp::AbstractIAlignment
~AbstractISequence() :
bpp::AbstractISequence
~AbstractOAlignment() :
bpp::AbstractOAlignment
~AbstractOSequence() :
bpp::AbstractOSequence
~AbstractReverseTransliterator() :
bpp::AbstractReverseTransliterator
~AbstractSequenceContainer() :
bpp::AbstractSequenceContainer
~AbstractSequenceContainerIterator() :
bpp::AbstractSequenceContainerIterator
~AbstractSequencePositionIterator() :
bpp::AbstractSequencePositionIterator
~AbstractSiteContainerIterator() :
bpp::AbstractSiteContainerIterator
~AbstractTransliterator() :
bpp::AbstractTransliterator
~AlignedSequenceContainer() :
bpp::AlignedSequenceContainer
~Alphabet() :
bpp::Alphabet
~AlphabetException() :
bpp::AlphabetException
~AlphabetIndex1() :
bpp::AlphabetIndex1
~AlphabetIndex2() :
bpp::AlphabetIndex2
~AlphabetMismatchException() :
bpp::AlphabetMismatchException
~AlphabetState() :
bpp::AlphabetState
~AlphabetTools() :
bpp::AlphabetTools
~BadCharException() :
bpp::BadCharException
~BadIntException() :
bpp::BadIntException
~BasicSequence() :
bpp::BasicSequence
~BasicSymbolList() :
bpp::BasicSymbolList
~BinaryAlphabet() :
bpp::BinaryAlphabet
~BLOSUM50() :
bpp::BLOSUM50
~BowkerTest() :
bpp::BowkerTest
~BppOAlignmentReaderFormat() :
bpp::BppOAlignmentReaderFormat
~BppOAlignmentWriterFormat() :
bpp::BppOAlignmentWriterFormat
~BppOAlphabetIndex1Format() :
bpp::BppOAlphabetIndex1Format
~BppOAlphabetIndex2Format() :
bpp::BppOAlphabetIndex2Format
~BppOSequenceReaderFormat() :
bpp::BppOSequenceReaderFormat
~BppOSequenceStreamReaderFormat() :
bpp::BppOSequenceStreamReaderFormat
~BppOSequenceWriterFormat() :
bpp::BppOSequenceWriterFormat
~CharStateNotSupportedException() :
bpp::CharStateNotSupportedException
~Clustal() :
bpp::Clustal
~CodonAlphabet() :
bpp::CodonAlphabet
~CodonSiteTools() :
bpp::CodonSiteTools
~CompleteSiteContainerIterator() :
bpp::CompleteSiteContainerIterator
~CompressedVectorSiteContainer() :
bpp::CompressedVectorSiteContainer
~ConstSequenceIterator() :
bpp::ConstSequenceIterator
~ConstSequenceWithQualityIterator() :
bpp::ConstSequenceWithQualityIterator
~ConstSiteIterator() :
bpp::ConstSiteIterator
~DCSE() :
bpp::DCSE
~DefaultAlphabet() :
bpp::DefaultAlphabet
~DefaultNucleotideScore() :
bpp::DefaultNucleotideScore
~DistanceMatrix() :
bpp::DistanceMatrix
~DNA() :
bpp::DNA
~DNAToRNA() :
bpp::DNAToRNA
~EchinodermMitochondrialCodonAlphabet() :
bpp::EchinodermMitochondrialCodonAlphabet
~EchinodermMitochondrialGeneticCode() :
bpp::EchinodermMitochondrialGeneticCode
~EdSymbolList() :
bpp::EdSymbolList
~EmptyContainerException() :
bpp::EmptyContainerException
~EmptySequenceException() :
bpp::EmptySequenceException
~EmptySiteException() :
bpp::EmptySiteException
~Fasta() :
bpp::Fasta
~FileIndex() :
bpp::Fasta::FileIndex
~GenBank() :
bpp::GenBank
~GeneticCode() :
bpp::GeneticCode
~GranthamAAChemicalDistance() :
bpp::GranthamAAChemicalDistance
~GranthamAAPolarityIndex() :
bpp::GranthamAAPolarityIndex
~GranthamAAVolumeIndex() :
bpp::GranthamAAVolumeIndex
~IAlignment() :
bpp::IAlignment
~InvertebrateMitochondrialCodonAlphabet() :
bpp::InvertebrateMitochondrialCodonAlphabet
~InvertebrateMitochondrialGeneticCode() :
bpp::InvertebrateMitochondrialGeneticCode
~IOSequence() :
bpp::IOSequence
~IoSequenceFactory() :
bpp::IoSequenceFactory
~IOSequenceStream() :
bpp::IOSequenceStream
~ISequence() :
bpp::ISequence
~ISequenceStream() :
bpp::ISequenceStream
~KleinAANetChargeIndex() :
bpp::KleinAANetChargeIndex
~LetterAlphabet() :
bpp::LetterAlphabet
~MapSequenceContainer() :
bpp::MapSequenceContainer
~Mase() :
bpp::Mase
~MaseHeader() :
bpp::MaseHeader
~MiyataAAChemicalDistance() :
bpp::MiyataAAChemicalDistance
~NexusIOSequence() :
bpp::NexusIOSequence
~NoGapSiteContainerIterator() :
bpp::NoGapSiteContainerIterator
~NucleicAcidsReplication() :
bpp::NucleicAcidsReplication
~NucleicAlphabet() :
bpp::NucleicAlphabet
~NucleicAlphabetState() :
bpp::NucleicAlphabetState
~OAlignment() :
bpp::OAlignment
~OrderedSequenceContainer() :
bpp::OrderedSequenceContainer
~OSequence() :
bpp::OSequence
~OSequenceStream() :
bpp::OSequenceStream
~PhredPhd() :
bpp::PhredPhd
~PhredPoly() :
bpp::PhredPoly
~Phylip() :
bpp::Phylip
~ProteicAlphabet() :
bpp::ProteicAlphabet
~ProteicAlphabetState() :
bpp::ProteicAlphabetState
~ReverseTransliterator() :
bpp::ReverseTransliterator
~RNA() :
bpp::RNA
~RNY() :
bpp::RNY
~Sequence() :
bpp::Sequence
~SequenceApplicationTools() :
bpp::SequenceApplicationTools
~SequenceContainer() :
bpp::SequenceContainer
~SequenceContainerTools() :
bpp::SequenceContainerTools
~SequenceException() :
bpp::SequenceException
~SequenceFileIndex() :
bpp::SequenceFileIndex
~SequenceIterator() :
bpp::SequenceIterator
~SequenceMask() :
bpp::SequenceMask
~SequenceNotAlignedException() :
bpp::SequenceNotAlignedException
~SequenceNotFoundException() :
bpp::SequenceNotFoundException
~SequencePositionIterator() :
bpp::SequencePositionIterator
~SequenceQuality() :
bpp::SequenceQuality
~SequenceTools() :
bpp::SequenceTools
~SequenceWalker() :
bpp::SequenceWalker
~SequenceWithAnnotation() :
bpp::SequenceWithAnnotation
~SequenceWithGapException() :
bpp::SequenceWithGapException
~SequenceWithQuality() :
bpp::SequenceWithQuality
~SequenceWithQualityIterator() :
bpp::SequenceWithQualityIterator
~SimpleIndexDistance() :
bpp::SimpleIndexDistance
~SimpleScore() :
bpp::SimpleScore
~SimpleSequenceContainerIterator() :
bpp::SimpleSequenceContainerIterator
~SimpleSequencePositionIterator() :
bpp::SimpleSequencePositionIterator
~SimpleSiteContainerIterator() :
bpp::SimpleSiteContainerIterator
~Site() :
bpp::Site
~SiteContainer() :
bpp::SiteContainer
~SiteContainerTools() :
bpp::SiteContainerTools
~SiteException() :
bpp::SiteException
~SiteIterator() :
bpp::SiteIterator
~SiteNotFoundException() :
bpp::SiteNotFoundException
~SiteTools() :
bpp::SiteTools
~SiteWithGapException() :
bpp::SiteWithGapException
~StandardCodonAlphabet() :
bpp::StandardCodonAlphabet
~StandardGeneticCode() :
bpp::StandardGeneticCode
~Stockholm() :
bpp::Stockholm
~StopCodonException() :
bpp::StopCodonException
~StreamSequenceIterator() :
bpp::StreamSequenceIterator
~StreamSequenceWithQualityIterator() :
bpp::StreamSequenceWithQualityIterator
~StringSequenceTools() :
bpp::StringSequenceTools
~SymbolList() :
bpp::SymbolList
~SymbolListEditionEvent() :
bpp::SymbolListEditionEvent
~SymbolListListener() :
bpp::SymbolListListener
~SymbolListTools() :
bpp::SymbolListTools
~Transliterator() :
bpp::Transliterator
~UserAlphabetIndex1() :
bpp::UserAlphabetIndex1
~VectorSequenceContainer() :
bpp::VectorSequenceContainer
~VectorSiteContainer() :
bpp::VectorSiteContainer
~VertebrateMitochondrialCodonAlphabet() :
bpp::VertebrateMitochondrialCodonAlphabet
~VertebrateMitochondrialGeneticCode() :
bpp::VertebrateMitochondrialGeneticCode
~WordAlphabet() :
bpp::WordAlphabet
~YeastMitochondrialCodonAlphabet() :
bpp::YeastMitochondrialCodonAlphabet
~YeastMitochondrialGeneticCode() :
bpp::YeastMitochondrialGeneticCode
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Generated on Thu May 23 2013 01:16:12 for bpp-seq by
1.7.6.1