- e -
- Element()
: bpp::Nhx::Element
, bpp::TreeTemplateTools::Element
- EmbeddedModel()
: bpp::LLG08_EHO::EmbeddedModel
, bpp::LLG08_UL3::EmbeddedModel
, bpp::LLG08_EX2::EmbeddedModel
, bpp::LGL08_CAT::EmbeddedModel
, bpp::LLG08_EX3::EmbeddedModel
, bpp::LLG08_UL2::EmbeddedModel
- enable()
: bpp::TreeDrawingListener
, bpp::TreeDrawingListenerAdapter
- enableContinuousRates()
: bpp::NonHomogeneousSequenceSimulator
- enableDerivatives()
: bpp::AbstractTreeLikelihood
, bpp::TreeLikelihood
- enableEigenDecomposition()
: bpp::AbstractSubstitutionModel
, bpp::MarkovModulatedSubstitutionModel
, bpp::SubstitutionModel
, bpp::AbstractBiblioSubstitutionModel
- enableExtendedBootstrapProperty()
: bpp::Newick
- enableFirstOrderDerivatives()
: bpp::AbstractTreeLikelihood
, bpp::GlobalClockTreeLikelihoodFunctionWrapper
- enableListener()
: bpp::TreeDrawingDisplayControler
- enableSecondOrderDerivatives()
: bpp::AbstractTreeLikelihood
, bpp::GlobalClockTreeLikelihoodFunctionWrapper
, bpp::AbstractTreeLikelihood
, bpp::GlobalClockTreeLikelihoodFunctionWrapper
- eraseNeighborArrays()
: bpp::DRASDRTreeLikelihoodNodeData
, bpp::DRTreeParsimonyNodeData
- estimateDistanceMatrix()
: bpp::OptimizationTools
- evolve()
: bpp::MutationProcess
, bpp::SimpleMutationProcess
, bpp::AbstractMutationProcess
, bpp::NonHomogeneousSequenceSimulator
- evolveInternal()
: bpp::NonHomogeneousSequenceSimulator
- ExponentialDiscreteRateDistribution()
: bpp::ExponentialDiscreteRateDistribution
- extractAlph()
: bpp::AbstractWordSubstitutionModel