- e -

• Element() : bpp::Nhx::Element , bpp::TreeTemplateTools::Element
• EmbeddedModel() : bpp::LLG08_EHO::EmbeddedModel , bpp::LLG08_UL3::EmbeddedModel , bpp::LLG08_EX2::EmbeddedModel , bpp::LGL08_CAT::EmbeddedModel , bpp::LLG08_EX3::EmbeddedModel , bpp::LLG08_UL2::EmbeddedModel
• enable() : bpp::TreeDrawingListener , bpp::TreeDrawingListenerAdapter
• enableContinuousRates() : bpp::NonHomogeneousSequenceSimulator
• enableDerivatives() : bpp::AbstractTreeLikelihood , bpp::TreeLikelihood
• enableEigenDecomposition() : bpp::AbstractSubstitutionModel , bpp::MarkovModulatedSubstitutionModel , bpp::SubstitutionModel , bpp::AbstractBiblioSubstitutionModel
• enableExtendedBootstrapProperty() : bpp::Newick
• enableFirstOrderDerivatives() : bpp::AbstractTreeLikelihood , bpp::GlobalClockTreeLikelihoodFunctionWrapper
• enableListener() : bpp::TreeDrawingDisplayControler
• enableSecondOrderDerivatives() : bpp::AbstractTreeLikelihood , bpp::GlobalClockTreeLikelihoodFunctionWrapper , bpp::AbstractTreeLikelihood , bpp::GlobalClockTreeLikelihoodFunctionWrapper
• eraseNeighborArrays() : bpp::DRASDRTreeLikelihoodNodeData , bpp::DRTreeParsimonyNodeData
• estimateDistanceMatrix() : bpp::OptimizationTools
• evolve() : bpp::MutationProcess , bpp::SimpleMutationProcess , bpp::AbstractMutationProcess , bpp::NonHomogeneousSequenceSimulator
• evolveInternal() : bpp::NonHomogeneousSequenceSimulator
• ExponentialDiscreteRateDistribution() : bpp::ExponentialDiscreteRateDistribution
• extractAlph() : bpp::AbstractWordSubstitutionModel