File List

Here is a list of all files with brief descriptions:

Bpp/BppBoolean.h [code]
Bpp/BppString.cpp [code]
Bpp/BppString.h [code]
Bpp/BppVector.h [code]
Bpp/Clonable.h [code]
Bpp/Exceptions.cpp [code]
Bpp/Exceptions.h [code]
Bpp/App/ApplicationTools.cpp [code]
Bpp/App/ApplicationTools.h [code]
Bpp/App/BppApplication.cpp [code]
Bpp/App/BppApplication.h [code]
Bpp/App/NumCalcApplicationTools.cpp [code]
Bpp/App/NumCalcApplicationTools.h [code]
Bpp/Graph/BasicONode.cpp [code]
Bpp/Graph/BasicONode.h [code]
Bpp/Graph/BasicTNode.cpp [code]
Bpp/Graph/BasicTNode.h [code]
Bpp/Graph/ONode.h [code]
Bpp/Graph/TNode.h [code]
Bpp/Graph/UNode.h [code]
Bpp/Graphics/AbstractGraphicDevice.h [code]
Bpp/Graphics/ColorManager.h [code]
Bpp/Graphics/ColorSet.h [code]
Bpp/Graphics/ColorTools.cpp [code]
Bpp/Graphics/ColorTools.h [code]
Bpp/Graphics/DefaultColorSet.h [code]
Bpp/Graphics/GraphicDevice.cpp [code]
Bpp/Graphics/GraphicDevice.h [code]
Bpp/Graphics/Point2D.h [code]
Bpp/Graphics/Point2DTools.h [code]
Bpp/Graphics/RgbColor.h [code]
Bpp/Graphics/Fig/XFigGraphicDevice.cpp [code]
Bpp/Graphics/Fig/XFigGraphicDevice.h [code]
Bpp/Graphics/Fig/XFigLaTeXFontManager.cpp [code]
Bpp/Graphics/Fig/XFigLaTeXFontManager.h [code]
Bpp/Graphics/Fig/XFigPostscriptFontManager.cpp [code]
Bpp/Graphics/Fig/XFigPostscriptFontManager.h [code]
Bpp/Graphics/Font/Font.cpp [code]
Bpp/Graphics/Font/Font.h [code]
Bpp/Graphics/Font/FontManager.h [code]
Bpp/Graphics/Latex/DvipsColorSet.cpp [code]
Bpp/Graphics/Latex/DvipsColorSet.h [code]
Bpp/Graphics/Latex/PgfGraphicDevice.cpp [code]
Bpp/Graphics/Latex/PgfGraphicDevice.h [code]
Bpp/Graphics/Molscript/MolscriptColorSet.cpp [code]
Bpp/Graphics/Molscript/MolscriptColorSet.h [code]
Bpp/Graphics/R/RColorSet.cpp [code]
Bpp/Graphics/R/RColorSet.h [code]
Bpp/Graphics/Svg/SvgGraphicDevice.cpp [code]
Bpp/Graphics/Svg/SvgGraphicDevice.h [code]
Bpp/Io/BppODiscreteDistributionFormat.cpp [code]
Bpp/Io/BppODiscreteDistributionFormat.h [code]
Bpp/Io/BppOParametrizableFormat.cpp [code]
Bpp/Io/BppOParametrizableFormat.h [code]
Bpp/Io/FileTools.cpp [code]
Bpp/Io/FileTools.h [code]
Bpp/Io/IoDiscreteDistribution.h [code]
Bpp/Io/IoDiscreteDistributionFactory.cpp [code]
Bpp/Io/IoDiscreteDistributionFactory.h [code]
Bpp/Io/IoFormat.h [code]
Bpp/Io/IoParametrizable.h [code]
Bpp/Io/OutputStream.h [code]
Bpp/Numeric/AbstractParameterAliasable.cpp [code]
Bpp/Numeric/AbstractParameterAliasable.h [code]
Bpp/Numeric/AbstractParametrizable.cpp [code]
Bpp/Numeric/AbstractParametrizable.h [code]
Bpp/Numeric/AdaptiveKernelDensityEstimation.cpp [code]
Bpp/Numeric/AdaptiveKernelDensityEstimation.h [code]
Bpp/Numeric/AutoParameter.cpp [code]
Bpp/Numeric/AutoParameter.h [code]
Bpp/Numeric/Constraints.h [code]
Bpp/Numeric/DataTable.cpp [code]
Bpp/Numeric/DataTable.h [code]
Bpp/Numeric/DataTableExceptions.h [code]
Bpp/Numeric/Number.h [code]
Bpp/Numeric/NumConstants.h [code]
Bpp/Numeric/NumTools.cpp [code]
Bpp/Numeric/NumTools.h [code]
Bpp/Numeric/Parameter.cpp [code]
Bpp/Numeric/Parameter.h [code]
Bpp/Numeric/ParameterAliasable.h [code]
Bpp/Numeric/ParameterExceptions.cpp [code]
Bpp/Numeric/ParameterExceptions.h [code]
Bpp/Numeric/ParameterList.cpp [code]
Bpp/Numeric/ParameterList.h [code]
Bpp/Numeric/Parametrizable.h [code]
Bpp/Numeric/Range.h [code]
Bpp/Numeric/TransformedParameter.h [code]
Bpp/Numeric/VectorExceptions.h [code]
Bpp/Numeric/VectorTools.cpp [code]
Bpp/Numeric/VectorTools.h [code]
Bpp/Numeric/Function/AbstractNumericalDerivative.h [code]
Bpp/Numeric/Function/AbstractOptimizer.cpp [code]
Bpp/Numeric/Function/AbstractOptimizer.h [code]
Bpp/Numeric/Function/BfgsMultiDimensions.cpp [code]
Bpp/Numeric/Function/BfgsMultiDimensions.h [code]
Bpp/Numeric/Function/BrentOneDimension.cpp [code]
Bpp/Numeric/Function/BrentOneDimension.h [code]
Bpp/Numeric/Function/ConjugateGradientMultiDimensions.cpp [code]
Bpp/Numeric/Function/ConjugateGradientMultiDimensions.h [code]
Bpp/Numeric/Function/DirectionFunction.cpp [code]
Bpp/Numeric/Function/DirectionFunction.h [code]
Bpp/Numeric/Function/DownhillSimplexMethod.cpp [code]
Bpp/Numeric/Function/DownhillSimplexMethod.h [code]
Bpp/Numeric/Function/FivePointsNumericalDerivative.cpp [code]
Bpp/Numeric/Function/FivePointsNumericalDerivative.h [code]
Bpp/Numeric/Function/Functions.h [code]
Bpp/Numeric/Function/FunctionTools.cpp [code]
Bpp/Numeric/Function/FunctionTools.h [code]
Bpp/Numeric/Function/GoldenSectionSearch.cpp [code]
Bpp/Numeric/Function/GoldenSectionSearch.h [code]
Bpp/Numeric/Function/MetaOptimizer.cpp [code]
Bpp/Numeric/Function/MetaOptimizer.h [code]
Bpp/Numeric/Function/NewtonBacktrackOneDimension.cpp [code]
Bpp/Numeric/Function/NewtonBacktrackOneDimension.h [code]
Bpp/Numeric/Function/NewtonOneDimension.cpp [code]
Bpp/Numeric/Function/NewtonOneDimension.h [code]
Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp [code]
Bpp/Numeric/Function/OneDimensionOptimizationTools.h [code]
Bpp/Numeric/Function/OptimizationStopCondition.cpp [code]
Bpp/Numeric/Function/OptimizationStopCondition.h [code]
Bpp/Numeric/Function/Optimizer.h [code]
Bpp/Numeric/Function/PowellMultiDimensions.cpp [code]
Bpp/Numeric/Function/PowellMultiDimensions.h [code]
Bpp/Numeric/Function/ReparametrizationFunctionWrapper.cpp [code]
Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h [code]
Bpp/Numeric/Function/SimpleMultiDimensions.cpp [code]
Bpp/Numeric/Function/SimpleMultiDimensions.h [code]
Bpp/Numeric/Function/SimpleNewtonMultiDimensions.cpp [code]
Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h [code]
Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp [code]
Bpp/Numeric/Function/ThreePointsNumericalDerivative.h [code]
Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp [code]
Bpp/Numeric/Function/TwoPointsNumericalDerivative.h [code]
Bpp/Numeric/Hmm/HmmEmissionProbabilities.h [code]
Bpp/Numeric/Hmm/HmmExceptions.h [code]
Bpp/Numeric/Hmm/HmmLikelihood.h [code]
Bpp/Numeric/Hmm/HmmStateAlphabet.h [code]
Bpp/Numeric/Hmm/HmmTransitionMatrix.h [code]
Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp [code]
Bpp/Numeric/Hmm/LogsumHmmLikelihood.h [code]
Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp [code]
Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h [code]
Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp [code]
Bpp/Numeric/Hmm/RescaledHmmLikelihood.h [code]
Bpp/Numeric/Matrix/EigenValue.h [code]
Bpp/Numeric/Matrix/LUDecomposition.h [code]
Bpp/Numeric/Matrix/Matrix.h [code]
Bpp/Numeric/Matrix/MatrixTools.h [code]
Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp [code]
Bpp/Numeric/Prob/AbstractDiscreteDistribution.h [code]
Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp [code]
Bpp/Numeric/Prob/BetaDiscreteDistribution.h [code]
Bpp/Numeric/Prob/ConstantDistribution.cpp [code]
Bpp/Numeric/Prob/ConstantDistribution.h [code]
Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp [code]
Bpp/Numeric/Prob/DirichletDiscreteDistribution.h [code]
Bpp/Numeric/Prob/DiscreteDistribution.h [code]
Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp [code]
Bpp/Numeric/Prob/ExponentialDiscreteDistribution.h [code]
Bpp/Numeric/Prob/GammaDiscreteDistribution.cpp [code]
Bpp/Numeric/Prob/GammaDiscreteDistribution.h [code]
Bpp/Numeric/Prob/GaussianDiscreteDistribution.cpp [code]
Bpp/Numeric/Prob/GaussianDiscreteDistribution.h [code]
Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp [code]
Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.h [code]
Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp [code]
Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.h [code]
Bpp/Numeric/Prob/MultipleDiscreteDistribution.h [code]
Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp [code]
Bpp/Numeric/Prob/SimpleDiscreteDistribution.h [code]
Bpp/Numeric/Prob/Simplex.cpp [code]
Bpp/Numeric/Prob/Simplex.h [code]
Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp [code]
Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.h [code]
Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp [code]
Bpp/Numeric/Prob/UniformDiscreteDistribution.h [code]
Bpp/Numeric/Random/ContingencyTableGenerator.cpp [code]
Bpp/Numeric/Random/ContingencyTableGenerator.h [code]
Bpp/Numeric/Random/RandomFactory.h [code]
Bpp/Numeric/Random/RandomTools.cpp [code]
Bpp/Numeric/Random/RandomTools.h [code]
Bpp/Numeric/Random/Uniform01K.cpp [code]
Bpp/Numeric/Random/Uniform01K.h [code]
Bpp/Numeric/Random/Uniform01QD.cpp [code]
Bpp/Numeric/Random/Uniform01QD.h [code]
Bpp/Numeric/Random/Uniform01WH.cpp [code]
Bpp/Numeric/Random/Uniform01WH.h [code]
Bpp/Numeric/Stat/ContingencyTableTest.cpp [code]
Bpp/Numeric/Stat/ContingencyTableTest.h [code]
Bpp/Numeric/Stat/StatTest.h [code]
Bpp/Numeric/Stat/StatTools.cpp [code]
Bpp/Numeric/Stat/StatTools.h [code]
Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp [code]
Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.h [code]
Bpp/Numeric/Stat/Mva/DualityDiagram.cpp [code]
Bpp/Numeric/Stat/Mva/DualityDiagram.h [code]
Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp [code]
Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.h [code]
Bpp/Text/KeyvalTools.cpp [code]
Bpp/Text/KeyvalTools.h [code]
Bpp/Text/NestedStringTokenizer.cpp [code]
Bpp/Text/NestedStringTokenizer.h [code]
Bpp/Text/StringTokenizer.cpp [code]
Bpp/Text/StringTokenizer.h [code]
Bpp/Text/TextTools.cpp [code]
Bpp/Text/TextTools.h [code]
Bpp/Utils/AttributesTools.cpp [code]
Bpp/Utils/AttributesTools.h [code]
Bpp/Utils/MapTools.h [code]