bpp-seq
2.1.0
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Here is a list of all files with brief descriptions:
[detail level
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Bpp
Seq
Alphabet
AbstractAlphabet.cpp
AbstractAlphabet.h
Alphabet.h
AlphabetExceptions.cpp
AlphabetExceptions.h
AlphabetState.h
AlphabetTools.cpp
AlphabetTools.h
BinaryAlphabet.cpp
BinaryAlphabet.h
CaseMaskedAlphabet.cpp
CaseMaskedAlphabet.h
CodonAlphabet.cpp
CodonAlphabet.h
DefaultAlphabet.cpp
DefaultAlphabet.h
DNA.cpp
DNA.h
EchinodermMitochondrialCodonAlphabet.cpp
EchinodermMitochondrialCodonAlphabet.h
InvertebrateMitochondrialCodonAlphabet.cpp
InvertebrateMitochondrialCodonAlphabet.h
LetterAlphabet.h
NucleicAlphabet.h
NucleicAlphabetState.h
ProteicAlphabet.cpp
ProteicAlphabet.h
ProteicAlphabetState.h
RNA.cpp
RNA.h
RNY.cpp
RNY.h
StandardCodonAlphabet.cpp
StandardCodonAlphabet.h
VertebrateMitochondrialCodonAlphabet.cpp
VertebrateMitochondrialCodonAlphabet.h
WordAlphabet.cpp
WordAlphabet.h
YeastMitochondrialCodonAlphabet.cpp
YeastMitochondrialCodonAlphabet.h
AlphabetIndex
AAChargeIndex.h
AAChenGuHuangHydrophobicityIndex.h
AAChouFasmanAHelixIndex.h
AAChouFasmanBSheetIndex.h
AAChouFasmanTurnIndex.h
AAIndex1Entry.cpp
AAIndex1Entry.h
AAIndex2Entry.cpp
AAIndex2Entry.h
AAMassIndex.h
AASEA1030Index.h
AASEAInf10Index.h
AASEASup30Index.h
AASurfaceIndex.h
AAVolumeIndex.h
AlphabetIndex1.h
AlphabetIndex2.h
BLOSUM50.cpp
BLOSUM50.h
DefaultNucleotideScore.cpp
DefaultNucleotideScore.h
GranthamAAChemicalDistance.cpp
GranthamAAChemicalDistance.h
GranthamAAPolarityIndex.h
GranthamAAVolumeIndex.h
KleinAANetChargeIndex.h
MiyataAAChemicalDistance.cpp
MiyataAAChemicalDistance.h
SimpleIndexDistance.h
SimpleScore.cpp
SimpleScore.h
App
SequenceApplicationTools.cpp
SequenceApplicationTools.h
Container
AbstractSequenceContainer.cpp
AbstractSequenceContainer.h
AlignedSequenceContainer.cpp
AlignedSequenceContainer.h
CompressedVectorSiteContainer.cpp
CompressedVectorSiteContainer.h
MapSequenceContainer.cpp
MapSequenceContainer.h
OrderedSequenceContainer.h
SequenceContainer.h
SequenceContainerExceptions.h
SequenceContainerIterator.cpp
SequenceContainerIterator.h
SequenceContainerTools.cpp
SequenceContainerTools.h
SiteContainer.h
SiteContainerExceptions.cpp
SiteContainerExceptions.h
SiteContainerIterator.cpp
SiteContainerIterator.h
SiteContainerTools.cpp
SiteContainerTools.h
VectorSequenceContainer.cpp
VectorSequenceContainer.h
VectorSiteContainer.cpp
VectorSiteContainer.h
GeneticCode
EchinodermMitochondrialGeneticCode.cpp
EchinodermMitochondrialGeneticCode.h
GeneticCode.cpp
GeneticCode.h
InvertebrateMitochondrialGeneticCode.cpp
InvertebrateMitochondrialGeneticCode.h
StandardGeneticCode.cpp
StandardGeneticCode.h
VertebrateMitochondrialGeneticCode.cpp
VertebrateMitochondrialGeneticCode.h
YeastMitochondrialGeneticCode.cpp
YeastMitochondrialGeneticCode.h
Io
AbstractIAlignment.h
AbstractISequence.h
AbstractOAlignment.h
AbstractOSequence.h
BppOAlignmentReaderFormat.cpp
BppOAlignmentReaderFormat.h
BppOAlignmentWriterFormat.cpp
BppOAlignmentWriterFormat.h
BppOAlphabetIndex1Format.cpp
BppOAlphabetIndex1Format.h
BppOAlphabetIndex2Format.cpp
BppOAlphabetIndex2Format.h
BppOSequenceReaderFormat.cpp
BppOSequenceReaderFormat.h
BppOSequenceStreamReaderFormat.cpp
BppOSequenceStreamReaderFormat.h
BppOSequenceWriterFormat.cpp
BppOSequenceWriterFormat.h
Clustal.cpp
Clustal.h
Dcse.cpp
Dcse.h
Fasta.cpp
Fasta.h
GenBank.cpp
GenBank.h
IoSequence.h
IoSequenceFactory.cpp
IoSequenceFactory.h
IoSequenceStream.h
ISequence.h
ISequenceStream.h
Mase.cpp
Mase.h
MaseTools.cpp
MaseTools.h
NexusIoSequence.cpp
NexusIoSequence.h
NexusTools.cpp
NexusTools.h
OSequence.h
OSequenceStream.h
PhredPhd.cpp
PhredPhd.h
PhredPoly.cpp
PhredPoly.h
Phylip.cpp
Phylip.h
SequenceFileIndex.h
Stockholm.cpp
Stockholm.h
StreamSequenceIterator.cpp
StreamSequenceIterator.h
CodonSiteTools.cpp
CodonSiteTools.h
DistanceMatrix.cpp
DistanceMatrix.h
DNAToRNA.cpp
DNAToRNA.h
NucleicAcidsReplication.cpp
NucleicAcidsReplication.h
Sequence.cpp
Sequence.h
SequenceExceptions.cpp
SequenceExceptions.h
SequenceIterator.h
SequencePositionIterators.cpp
SequencePositionIterators.h
SequenceTools.cpp
SequenceTools.h
SequenceWalker.cpp
SequenceWalker.h
SequenceWithAnnotation.cpp
SequenceWithAnnotation.h
SequenceWithAnnotationTools.cpp
SequenceWithAnnotationTools.h
SequenceWithQuality.cpp
SequenceWithQuality.h
SequenceWithQualityTools.cpp
SequenceWithQualityTools.h
Site.cpp
Site.h
SiteExceptions.cpp
SiteExceptions.h
SiteIterator.h
SiteTools.cpp
SiteTools.h
StringSequenceTools.cpp
StringSequenceTools.h
SymbolList.cpp
SymbolList.h
SymbolListTools.cpp
SymbolListTools.h
Transliterator.cpp
Transliterator.h
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