bpp::SiteSimulator Class Reference

The SiteSimulator interface. SiteSimulator classes can simulate single sites. More...

#include <Bpp/Phyl/Simulation/SiteSimulator.h>

Inheritance diagram for bpp::SiteSimulator:

Public Member Functions
	SiteSimulator ()
virtual	~SiteSimulator ()
virtual Site *	simulate () const =0
virtual Site *	simulate (int ancestralState) const =0
virtual Site *	simulate (int ancestralState, double rate) const =0
virtual Site *	simulate (double rate) const =0
virtual std::vector< std::string >	getSequencesNames () const =0
virtual const Alphabet *	getAlphabet () const =0

Detailed Description

The SiteSimulator interface. SiteSimulator classes can simulate single sites.

See Also

SequenceSimulator interface for simulating whole sequence sets.

Definition at line 55 of file SiteSimulator.h.

Constructor & Destructor Documentation

bpp::SiteSimulator::SiteSimulator ( )

inline

Definition at line 58 of file SiteSimulator.h.

virtual bpp::SiteSimulator::~SiteSimulator ( )

inlinevirtual

Definition at line 59 of file SiteSimulator.h.

Member Function Documentation

virtual const Alphabet* bpp::SiteSimulator::getAlphabet ( ) const

pure virtual

Implemented in bpp::NonHomogeneousSequenceSimulator.

Referenced by bpp::SequenceSimulationTools::simulateSites().

virtual std::vector<std::string> bpp::SiteSimulator::getSequencesNames ( ) const

pure virtual

Implemented in bpp::NonHomogeneousSequenceSimulator.

Referenced by bpp::SequenceSimulationTools::simulateSites().

virtual Site* bpp::SiteSimulator::simulate ( ) const

pure virtual

Implemented in bpp::NonHomogeneousSequenceSimulator.

Referenced by bpp::SequenceSimulationTools::simulateSites().

virtual Site* bpp::SiteSimulator::simulate ( int  ancestralState ) const

pure virtual

Implemented in bpp::NonHomogeneousSequenceSimulator.

virtual Site* bpp::SiteSimulator::simulate ( int  ancestralState, double  rate  ) const

pure virtual

Implemented in bpp::NonHomogeneousSequenceSimulator.

virtual Site* bpp::SiteSimulator::simulate ( double  rate ) const

pure virtual

Implemented in bpp::NonHomogeneousSequenceSimulator.

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The documentation for this class was generated from the following file:

• Bpp/Phyl/Simulation/SiteSimulator.h